SNOMED Links and Reference Materials

This table contains the curated list of all references regarding the Bahmni SNOMED integration.

Summary

Reference Links

Summary

Reference Links

1

Github open source - Snowstorm. Terminology server with special support for SNOMED CT

https://github.com/IHTSDO/snowstorm

2

Snowstorm Test Server (released)

https://snowstorm.ihtsdotools.org/fhir/metadata

3

Snowstorm Dev Server for development use (new FHIR based)

https://dev-is-browser.ihtsdotools.org/fhir/metadata

4

Github open source - SNOMED Query Service. An implementation of the SNOMED CT Expression Constraint Language. Suggested for low-memory use

https://github.com/IHTSDO/snomed-query-service

5

SNOMED International Browser

https://browser.ihtsdotools.org/?acceptLicense=true

 

6

Snowstorm with FHIR

https://github.com/IHTSDO/snowstorm/blob/master/docs/using-the-fhir-api.md

7

ECL Query - Search for term asthma and its descendants

https://dev-is-browser.ihtsdotools.org/fhir/ValueSet/$expand?url=http://snomed.info/sct?fhir_vs=ecl/%3C64572001&filter=asthm

8

ECL Query - Search for terms with ancestors with FSN itself

https://dev-is-browser.ihtsdotools.org/fhir/ValueSet/$expand?url=http://snomed.info/sct?fhir_vs=ecl/%3E%3E195967001&includeDesignations=true

9

ECL Query - Get specific concept by ID

https://dev-is-browser.ihtsdotools.org/fhir/CodeSystem/$lookup?system=http://snomed.info/sct&code=12463005

10

How OpenMRS stores the mappings

username - admin

password - Admin123

https://demo.openmrs.org/openmrs/dictionary/concept.htm?conceptId=129473

11

SNOMED CT support for OpenMRS via FHIR - Michael Lawley (202111) - Explore this from OpenMRS (seems to create concepts in OpenMRS)

https://www.youtube.com/watch?v=Yx_vqt8jg7E

12

 

GitHub - aehrc/openmrs-module-terminologysearch: A module for OpenMRS to search a FHIR terminology server for concepts.

 

https://github.com/aehrc/openmrs-module-terminologysearch

13

The SNOMED CT Release File Specification - SNOMED Confluence

https://confluence.ihtsdotools.org/display/DOCRELFMT

14

SNOMED CT User Interface Examples

https://github.com/IHTSDO/snomed-ui-examples

15

SNOMED CT Search Demo

https://ihtsdo.github.io/snomed-ui-examples/

 

16

SNOMED Postman Collection
DEV Tools / Dev SNOMED server for testing 

https://github.com/IHTSDO/snowstorm-x/blob/master/docs/using-the-fhir-api.md

17

Tutorial: Introduction to SNOMED CT - Ian Spiers and Jon Zammit (202069)

https://www.youtube.com/watch?v=ELgXwo324pk

(Watch in 1.25x or 1.50x speed)

18

Best Practices for using SNOMED in EMRs/EHRs
Tutorial: SNOMED CT in the EHR - Anne Højen (202071)

https://www.youtube.com/watch?v=8VDf4slOAqo

(Watch in 1.25x or 1.50x speed)

19

Ontoserver Documentation

https://ontoserver.csiro.au/docs/6/

20

Shrimp - SNOMED CT Browser

http://ontoserver.csiro.au/shrimp/?concept=138875005&valueset=http%3A%2F%2Fsnomed.info%2Fsct%3Ffhir_vs

21

SNOMED CT - CDS Techical Example - Allergy to Beta Blocker

https://docs.google.com/document/d/1hKyuDTyzOJdyFR2lNZpGGQA-7NH6TmVaJSLfHQ1DiM4

22

Expression Constraint Language - Specification and Guide

http://snomed.org/ecl

23

Bahmni-SNOMED introductory session (16-Nov, By Akhil/Angshuman)
Passcode: ySH5!w!M

https://thoughtworks.zoom.us/rec/share/s1XRjmz4zOrJV6CnW6P23717JrDXlODdW7bDoPlTC2fR-V3DmarJzu-EcVuGM7LB.xghEv_8P3zVgI7AI

 

24

SNOMED CT Query Service - An implementation of the SNOMED CT Expression Constraint Language for low resource environments

https://github.com/IHTSDO/snomed-query-service

25

Snolytical - SNOMED CT Health Data Analytics Demonstrator

https://github.com/IHTSDO/health-data-analytics

26

Enabling Data Analytics from 0 to 100 using Open Source 202272 Anne Hojen:Kai Kewley

https://www.youtube.com/watch?v=9aSp31dJ0_E

27

Demonstrates the mappings between SNOMED CT, ICD-10 etc

https://github.com/IHTSDO/iid-icd-maps

28

SNOMED CT - ICD Mappings Demonstrator

https://ihtsdo.github.io/iid-icd-maps/

29

HL7 FHIR

http://hl7.org/fhir/index.html

30

Implementation Guide for using SNOMED CT with FHIR

https://confluence.ihtsdotools.org/display/FHIR/Implementation+Guide+for+using+SNOMED+CT+with+FHIR

31

CDS Hooks Sandbox

https://sandbox.cds-hooks.org/

32

SNOMED CT Expo

https://issuu.com/snomed/docs/snomed_ct_expo_2023_program?fr=sZTk5OTQ2NTE4OTU

33

Discussions with Andrew Kanter

https://talk.openmrs.org/t/bahmni-pat-call-on-17-may-2023-snomed-ct-and-bahmni-integration/39637/25
https://talk.openmrs.org/t/snomed-ct-as-a-source/37489/11

https://talk.openmrs.org/t/bahmni-pat-call-on-12-july-2023/40037/7

34

Guidelines for ATC Classification and DDD assignment

https://www.whocc.no/filearchive/publications/2023_guidelines_web.pdf

35

OpenMRS REST API

https://rest.openmrs.org/#openmrs-rest-api

36

SCT Implementation Demonstrator

https://github.com/IHTSDO/sct-implementation-demonstrator

37

SNOMED CT Implementation Demo - AllergyIntolerance HL7 FHIR Resource

https://ihtsdo.github.io/sct-implementation-demonstrator/#/allergies

38

SNOMED CT Search Demo

https://ihtsdo.github.io/snomed-ui-examples/

39

IHTSDO Glossary

https://www.nrces.in/download/files/pdf/doc_IhtsdoGlossary_Current-en-US_INT_20190312.pdf

40

Concept Dictionary Basics

https://wiki.openmrs.org/display/docs/Concept+Dictionary+Basics

41

Concept Data Model

https://wiki.openmrs.org/display/docs/Concept+Data+Model

42

OpenMRS Data Model

https://docs.openmrs.org/datamodel/

43

Observable example(Alej)

https://browser.ihtsdotools.org/?perspective=full&conceptId1=1269489004&edition=MAIN/2023-11-01&release=&languages=en

44

Translation in Bahmni

45

India SNOMED Drug Extension

https://www.nrces.in/services/national-releases

46

India Drug Extension for SNOMED CT

https://www.nrces.in/download/files/pdf/xdoc_SnomedCT-IN-BETA-ReleaseNotes_DrugExtension-en-IN_IN1000189_20180105.pdf

47

ABDM Drug Registry

https://abdm.gov.in:8081/uploads/Drug_Registry_Consultation_Paper_092e75a15e.pdf

48

OCL subscription module for OpenMRS

https://wiki.openmrs.org/display/docs/OCL+Subscription+Module

49

Various “collections” in OCL, with “CIEL"

https://app.openconceptlab.org/#/search/?q=CIEL&isTable=true&isList=false&page=1&exactMatch=off&type=collections

50

SNOMED Combinatorial Drug Example

http://snomed.info/id/776244001

51

Case report form for confirmed Novel Coronavirus COVID-19

https://www.who.int/publications/i/item/WHO-2019-nCoV-SurveillanceCRF-2022.1

52

Using Synthea to generate FHIR bulk export

https://github.com/synthetichealth/synthea/wiki/HL7-FHIR#configuring-fhir

53

FHIR Data Anonymization - Sample configuration file

https://github.com/microsoft/Tools-for-Health-Data-Anonymization/blob/master/docs/FHIR-anonymization.md#sample-configuration-file

54

Medication Request - HL7

http://hl7.org/fhir/R4/medicationrequest.html

55

Using EMR-enabled computerized decision support systems to reduce prescribing of potentially inappropriate medications

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6116772/

 

 

 

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